Overview
The RENCI/NCSA MotifNetwork environment is the beginning of a comprehensive software environment designed to provide access to high-throughput, domain-based analysis of genome-size collections of input sequences. This is accomplished by integrating many existing technologies into new and interoperable forms and simplifying access for the researchers. This environment utilizes a substantial amount of computational resources made possible by the incorporation of high performance computing (HPC) and grid computing concepts into MotifNetwork.
Overview
The RENCI/NCSA MotifNetwork environment is the beginning of a comprehensive software environment designed to provide access to high-throughput, domain-based analysis of genome-size collections of input sequences. This is accomplished by integrating many existing technologies into new and interoperable forms and simplifying access for the researchers. This environment utilizes a substantial amount of computational resources made possible by the incorporation of high performance computing (HPC) and grid computing concepts into MotifNetwork.
Publications
Tilson J.L., Blatecky, A., Rendon G.,Mao-Feng G., Jakobsson, MotifNetwork: Genome-Wide Domain Analysis using Grid-enabled, proceedings of 7th International Symposium on BioInformatics and BioEngineering, IEEE, 2007.
Tilson J.L., Rendon G.,Mao-Feng G.,Jakobsson, MotifNetwork: A Grid-enabled Workflow for High-throughput Domain Analysis of Biological Sequences: Implications for study of phylogeny, protein interactions, and intraspecies variation, proceedings of 7th International Symposium on BioInformatics and BioEngineering, IEEE, 2007. Best Paper Award
Project Team
Jeffrey L. Tilson
Collaborators
Eric Jakobsson, NCSA
Gloria Rendon, NCSA
