Papers authored or co-authored by RENCI staff are included in this archive. These papers were either published in academic/scientific journals or included in the proceedings of a professional conference. Please note that links to papers in online journals may be changed or removed by the journal and that passwords are sometimes required.
W. C. Ermler, J. L. Tilson, Generally contracted valence-core/valence basis sets for use with relativistic effective core potentials and spin-orbit coupling operators, Comp. Theor. Chem. (accepted) 2012
Y. Xin, I. Baldine, A. Mandal, C. Heermann, J. Chase, and A. Yumerefendi. “Embedding Virtual Topologies in Networked Clouds.”The 6th International Conference on Future Internet Technologies (CFI). Seoul, Korean, June 2011
Y. Xin, I. Baldine, J. Chase, T. Beyene, B. Parkhurst, and A. Chakrabortty. “Virtual Smart Grid Architecture and Control Framework.” 2nd IEEE International Conference on Smart Grid Communications (IEEE SmartGridComm), Brussels, Belgium, Oct. 2011
X. Ju, H. Zhang, W. Zeng,M. Sridharan, J. Li, A. Arora, R. Ramnath, Y. Xin. “LENS: Resource Specification for Wireless Sensor Network Experimentation Infrastructures. ” The 6th International Workshop on Wireless Network Testbeds, Experimental Evaluation and Characterization (WinTECH), Las Vegas, Nevada, Sep. 2011
Tilson JL, Ermler WC, Fowler RJ. 2011. CI potential energy curves for three states of RuO2+. Chemical Physics Letters 516:131-6
Rendon G, Kantorovitz R, Tilson JL, Jakobsson E. 2011. Identifying bacterial and archaeal homologs of pentameric ligand-gated ion channel (pLGIC) family using domain-based and alignment-based approaches. Channels (Austin, Tex) 5:325-44
Rendon G, Ger MF, Kantorovitz R et al. Understanding the “horizontal dimension” of molecular evolution to annotate, classify, and discover proteins with functional domains. JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY 25(1): 82–94 Jan. 2010
Datta, A.K., J.L. Tilson, G. Rendon, E. Jakobsson, “High-Throughput Sialylmotif Analysis in the Glycosyltransferase Protein Family,” proceedings in TeraGrid ‘op, Arlington, VA, June 22-25, 2009
Macenko, M., Niethammer, M., Marron, J.S., Borland, D., Woosley, J.T., Xiaojun Guan, Schmitt, C., Thomas, N.E. A method for normalizing histology slides for quantitative analysis. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI ’09. 2009.
Moore, R., A. Rajasekar, M. Wan, “Policy-based Distributed Data Management Systems“, OR’09, May 2009, Atlanta Georgia. http://irods.diceresearch.org/
Moore, R., M. Conrad, R. Marciano, A. Rajasekar, M. Wan, “Transcontinental Preservation Archive Prototype”, Indo-US Workshop on International Trends in Digital Preservation, Pune, India, March 2009.
Moore, R., “Management of very large distributed shared collections“, Encyclopedia of Library and Information Sciences, 2009.
Porterfield, A., R. Fowler, A. Mandal, M.Y. Lim. “Empirical Evaluation of Multi-Core Memory Concurrency,” Available as Technical Report TR-09-01, RENCI, North Carolina, Jan. 2009, available at http://www.renci.org/publications/techreports/TR-09-01.pdf.
Rajasekar, A., M. Wan, R. Moore, “Event Processing in Policy Oriented Data Grids”, Intelligent Event Processing AAAI Spring Symposium, Stanford, California, March 2009.
Rajasekar, A., R. Moore, M. Wan, W. Schroeder, “Universal View and Open Policy: Characteristics of Large-scale Data Management System,” CTS 2009.
Rajasekar, A., M. Wan, R. Moore, W. Schroeder, S.-Y. Chen, L. Gilbert, C.-Y. Hou, R. Marciano, P. Tooby, A. de Torcy, B. Zhu, “iRODS – integrated Rule Oriented Data System”, book in preparation, Synthesis Lectures on Information Concepts, Retrieval, and Services, Editor Gary Marchionini, Morgan Claypool Publishers.
L. Ramakrishnan, D. Nurmi, A. Mandal, C. Koelbel, D. Gannon, T. M. Huang, Y. S. Kee, G. Obertelli, K. Thyagaraja, R. Wolski, A. Yarkhan and D. Zagorodnov, “VGrADS: Enabling e-Science Workflows on Grids and Clouds with Fault Tolerance,” in Proceedings of the IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (SC) , November 2009.
Tilson, J.L., G. Kandaswamy, G. REndon, E. Jakobsson. “Algorithms and Performance Measurements for MotifNetwork Analysis Programs,” RENCI Technical Report, TG-09-02, July 2009.
Tilson, J.L., G. Kandaswamy, G. Rendon, E. Jakobsson, “MotifNetwork: High Throughput Determination of Evolutionary Domain Networks,” proceedings of the 2009 International Conference on Bioinformatics and Computational Biology (BIOCOMP’09), July 13-16, 2009.
Tran N, Qu PP, Simpson DA, Lindsey-Boltz L, Guan X, Schmitt CP, Ibrahim JG, Kaufmann WK. Cell biochemistry and biophysics. 2009;53(2):101-14. In silico construction of a protein interaction landscape for nucleotide excision repair. http://www.springerlink.com/content/t34q21210602w082.
Zhang, R., A. Mandal, C. Koelbel, and K. Cooper “Combined Fault Tolerance and Scheduling Techniques for Workflow Applications on Computational Grids,” in Proceedings of the IEEE International Symposium on Cluster Computing and the Grid (CCGrid) , May 2009, to appear.
Bebis, George, Richard D. Boyle, Barahm Parvin, Darko Koracin, Paolo Remagnino, Fatih Murat Porikli, Jörg Peters, James T. Klosowski, Laura L. Arns,Yu Ka Chun, Theresa-Marie Rhyne, Laura Monroe: Advances in Visual Computing, 4th International Symposium, ISVC 2008, Las Vegas, NV, USA, December 1-3, 2008. Proceedings, Part I Springer 2008. http://www.springer.com/computer/computer+imaging/book/978-3-540-89645-6.
Bebis, George , Richard D. Boyle, Bahram Parvin, Darko Koracin, Paolo Remagnino, Fatih Murat Porikli, Jörg Peters, James T. Klosowski, Laura L. Arns, Yu Ka Chun, Theresa-Marie Rhyne, Laura Monroe: Advances in Visual
Computing, 4th International Symposium, ISVC 2008, Las Vegas, NV, USA, December 1-3, 2008. Proceedings, Part II Springer 2008. http://www.springer.com/computer/computer+imaging/book/978-3-540-89645-6.
Brieger, Leesa, Anne Heavey. “Stormy weather: grid computing powers fine-scale climate modeling“, Feature story in International Science Grid This Week (iSGTW), Feb 27, 2008, Leesa Brieger and Anne Heavey, http://www.isgtw.org/?pid=1000860.
Buneci, Emma and D. Reed. Analysis of Application Heartbeats: Learning Structural and Temporal Features in Time Series Data for Identification of Performance Problems Under submission: Supercomputing Conference Nov 2008 http://portal.acm.org/citation.cfm?id=1413370.1413423&dl=ACM&coll=ACM
de Supinski, Bronis R., Rob Fowler, Todd Gamblin, Frank Mueller, Prasun Ratn, and Martin Schultz. An open infrastructure for scalable, reconfigurable analysis. In International Workshop on Scalable Tools for High-End Computing (STHEC 2008). ACM/SIGARCH, July 2008. http://moss.csc.ncsu.edu/~mueller/ftp/pub/mueller/papers/sthec08.pdf
Ehlers, C.L., D.A. Gilder, W.S. Slutske, P.A. Lind, and K.C. Wilhelmsen. (2008). Externalizing disorders in American Indians: Comorbidity and a genome wide linkage analysis. Am J Med. Genet B Neuropsychiatr. Genet.
Evans, M., S. Chall, X. Zhao, and T.M. Rhyne. “Visualization and Analysis of Microstructure in Three-Dimensional Discrete Numerical Models”, (submitted for publication to the American Society of Civil Engineers’ Journal of Computing in Civil Engineering – 2008 -presently under review).
Fowler, Robert J., Todd Gamblin, Allan Porterfield, Patrick Dreher, Song Huang and Balilnt Joo. Performance engineering challenges: the view from RENCI. J. Phys: Conf. Ser, page 5pp, October 2008.
Fowler, Robert J., Todd Gamblin, Gopi Kandaswamy, Anirban Mandal, Alan K. Porterfield, Lavanya Ramakrishnan, and Daniel Reed. Challenges of scale: When all computing becomes grid computing. In Lucio Grandinetti, editor, High Performance Computing and Grids in Action, Advances in Parallel Computing. IOS Press, Amsterdam, March 2008. http://www.booksonline.iospress.nl/Content/View.aspx?piid=8556
Gamblin, T., B.R. de Supinski, M. Schulz, R.J. Fowler, and D.A. Reed, D.A. Scalable load-balance measurement for SPMD codes. In submission, 2008. Published in IPDPS 2008: http://www.cs.unc.edu/~tgamblin/pubs/wavelet-sc08.pdf
Gamblin, Todd, Rob Fowler, and Daniel Reed. Scalable methods for monitoring and detecting behavioral classes in scientific codes. In Proceedings of the International Parallel and Distributed Processing Symposium 2008, Miami, FL, April 2008. To appear, IPDPS 2008. http://www.ieeexplore.ieee.org/Xplore/login.jsp?url=/stamp/stamp.jsp?arnumber=4536076&isnumber=4536075
Gamblin, Todd, Bronis R. de Supinski, M. Schultz, Rob Fowler and Daniel Reed. Scalable load-balance measurement for SPMD codes. In Proceedings of Supercomputing 2008, Austin, TX, November 2008. ACM/IEEE. http://portal.acm.org/citation.cfm?id=1413370.1413417&dl=ACM&coll=ACM
Huang, S. Traffic Grooming for Optical Networks: Foundations, Techniques and Frontiers Spring 2008, Chapter 5 Computational Complexity
Kandaswamy, G., A. Mandal, and D.A. Reed. “Fault Tolerance and Recovery of Scientific Workflows on Computational Grids,” Workshop on Resiliency in High-Performance Computing, 2008. http://vgrads.rice.edu/publications/resilience-ccgrid08
Kandaswamy, G., A. Mandal, and D.A. Reed. “Fault Tolerance and Recovery of Scientific Workflows on Computational Grids,” in Proceedings of the IEEE International Symposium on Cluster Computing and the Grid (CCGrid), Workshop on Resiliency in High-Performance Computing in conjunction with CCGrid’08, May 2008. http://www.renci.org/~anirban/papers/PaperResilience08-Anirban.pdf.
Lombardi, M. M., “Making the Grade: The Role of Assessment in Authentic Learning.”EDUCAUSE. January 2008 http://net.educause.edu/ir/library/pdf/ELI3009.pdf
Mandal, A. and G. Kandaswamy. “Resilient Workflow Execution in LEAD, ” Teragrid 2008, submitted.
Oblinger, D. and M. M. Lombardi, “Common Knowledge: Openness in Higher Education,” in Opening Up Education: The Collective Advancement of Education through Open Technology, Open Content, and Open Knowledge. MIT Press. October 2008. http://mitpress.mit.edu/books/chapters/0262033712chap25.pdf
Porterfield, Allan, Robert Fowler, and Mark Neyer. MAESTRO: dynamic runtime power control. In Workshop on Managed Multicore systems MMCS, Boston, MA, June 2008. http://www.cercs.gatech.edu/mmcs08/program/porterfield.pdf
Porterfield, A., R.J. Fowler, A. Mandal and M.Y. Lim. “Performance Consistency on Multi-socket AMD Opteron Systems,” Available as Technical Report TR-08-07, RENCI, North Carolina, Dec. 2008. http://www.renci.org/publications/techreports/TR-08-07.pdf
Proud, J.L., K.J. Galluppi. “NC-FIRST: Weather Information and Training for North Carolina Emergency Managers,” Preprints, 17th Symposium on Education, New Orleans, LA, American Meteorological Society. Jan. 2008. http://ams.confex.com/ams/88Annual/techprogram/paper_129278.htm
Proud, J.L. “Mobile Micro Rain Radar Deployments in North Carolina,” Preprints, 24th Conference on Interactive Information and Processing Systems, New Orleans, LA, American Meteorological Society. Jan. 2008 http://ams.confex.com/ams/88Annual/techprogram/paper_129290.htm
Quinzii, C.M., Vu,T.H., Min,K.C., Tanji, K., Barral S., Grewal, R.P., Kattah, A., Camano, P., Otaegui, D., Kunimatsu, T., Blake, D.M., Wilhelmsen, K.C., Rowland, L.P., Hays, A.P., Bonilla, E., and Hirano, M. (2008). X-linked dominant scapuloperoneal myopathy is due to a mutation in the gene encoding four-and-a-half-LIM protein 1. Am J Hum Genet 82, 208-213.
Rajasekar, A., M. Wan, R. Moore, W. Schroeder, “Federation of Rule-Based Data Grids”, Workshop on Digital Archive Preservation and Sustainability, September 2008, Baltimore, Maryland.
Tilson, Jeffery L., Mark Reed and Robert J. Fowler. Workflows for performance evaluation and tuning. In Proceedings 2008 IEEE International Conference on Cluster Computing (Cluster 2008), page 8pp, Tsukuba, Japan, September 2008. IEEE.
Bailey, David, Robert Lucas, Paul Hovland, Boyana Norris, Kathy Yelick, Dan Gunter, Bronis de Supinski, Dan Quinlan, Pat Worley, Jeff Vetter, Phil Roth, John Mellor-Crummey, Allan Snavely, Jeff Hollingsworth, Dan Reed, Rob Fowler, Ying Zhang, Mary Hall, Jacque Chame, Jack Dongarra, and Shirley Moore. Performance engineering: Understanding and improving the performance of large-scale codes. CT Watch Quarterly, 3(4):18–23, Nov 2007. http://www.isi.edu/~ddavis/rfl/WebPage/PERI-paper-v6.pdf
Baldine, I. and M. Vellala and A. Wang and G. N. Rouskas and R. Dutta and D. Stevenson “A Unified Software Architecture to Enable Cross-Layer Design in the Future Internet” in Proceedings of IEEE ICCCN 2007. http://www.csc.ncsu.edu/faculty/rouskas/Publications/Conferences/ICCCN-SILO-2007.pdf
Blatecky, A., K. Gamiel, L. Ramakrishnan, D. Reed, M. Reed. “Building the Bioscience Gateway, Science Gateways: Common Community Interfaces to Grid Resources,” Global Grid Forum 14, Chicago IL, June 27-30, 2007, www.teragrid.org/programs/sci_gateways/docs/GGFWorkshop-Bioportal.pdf
Buneci, Emma, and Daniel Reed. Qualitative performance characteristics of large-scale scientific workflows executing on the TeraGrid. Invited Presentation. Teragrid ’07 Conference – Student Research Competition, June 2007. Best Poster award. http://www.cs.duke.edu/~ebuneci/publications/Teragrid07PosterFinal.pdf
de Supinski, B.R., R. Fowler, T. Gamblin, F. Mueller, M. Schulz, and P. Ratn. An open framework for scalable, reconfigurable analysis. http://www4.ncsu.edu/~pratn/ScalaTrace/sc07/
Dutta, R. and G. N. Rouskas and I. Baldine and A. Bragg and D. Stevenson “The SILO Architecture for Services Integration, Control, and Optimization for the Future Internet” in Proceedings of IEEE ICC 2007. http://home.postech.ac.kr/~kiss/presentation5.ppt
Ehlers, C.L., W.S. Slutske, P.A. Lind, and K.C. Wilhelmsen (2007). Association between single nucleotide polymorphisms in the cannabinoid receptor gene (CNR1) and impulsivity in southwest California Indians. Twin Res Hum Genet 10, 805-811.
Ehlers, C.L., T.L. Wall, L. Corey, P. Lau, D.A. Gilder and K.C. Wilhelmsen (2007). Heritability of illicit drug use and transition to dependence in Southwest California Indians. Psychiatr. Genet 17, 171-176.
Gamblin, Todd, Prasun Ratn, Bronis R. de Supinkski, Martin Schulz, Frank Mueller, Robert J. Fowler, and Daniel A. Reed. An open framework for scalable, reconfigurable performance analysis. In Supercomputing 2007 (SC’07), Reno, NV, November 2007 (poster). http://sc07.supercomputing.org/schedule/event_detail.php?evid=11221
Guan, X., D. Bowman, J.L. Tilson, D. Simpson, G. Rendon, E. Jakobsson and W. Kaufman. “”, Determinants of genome stability in human disease,” Chapel Hill, NC, October 2007.
Guo, G., K.C. Wilhelmsen, and N. Hamilton (2007). Gene-lifecourse interaction for alcohol consumption in adolescence and young adulthood: Five monoamine genes. Am J Med. Genet B. Neuropsychiatr. Genet 144, 417-423.
International Research Network Connections Workshop Report; Future of IRNC Program – October, 2007. http://www.internet2.org/presentations/fall08/20081015-international-thompson.pdf
Lombardi, M., M. ELI. “Authentic Learning for the 21st Century: An Overview.” EDUCAUSE. May 2007. http://net.educause.edu/ir/library/pdf/ELI3009.pdf
Lombardi, M. M., “Approaches That Work: How Authentic Learning is Transforming Higher Education.” EDUCAUSE. July 2007. http://net.educause.edu/ir/library/pdf/ELI3013.pdf
McGee, J., J. L. Tilson, S. McLean. “Gateway to the TeraGrid for Bio-Scientists: A Tutorial. What does it do? How is it used in course curricula? How was it constructed?”, TeraGrid 2007, Madison, WI, June, 2007.
McLean, S., J. Shelton, J.L. Tilson, N. Nicely, E. Scott, D. Bedard, T. Ford, (RENCI) and B. Gotwals, G. Gabrielli, G.A. Stefan (NCSSM) “RENCI Summer Institute” July 2007.
Muallem, H., K.E. North, M. Kakoki, M.K. Wojczynski, X. Li, M. Grove, E. Boerwinkle, K.C. Wilhelmsen, G. Heiss, and N. Maeda (2007). Quantitative effects of common genetic variations in the 3′UTR of the human LDL-receptor gene and their associations with plasma lipid levels in the Atherosclerosis Risk in Communities study. Hum Genet 121, 421-431.
Rendon, G., S. McLean, J.R. Mashl, M.A., Miller, N. Nicely, B. Southey, J. Tenegra, J. L. Tilson, and E. Jakobsson. “Bridging Teaching, Learning, and Education in Grid-enabled Bioinformatics”, TeraGrid 2007, Madison, WI, June, 2007.
Rendon, G., J. Tilson, M-F Ger, E. Jakobsson. “Finding prokaryotic ion channels”, American Chemical Society ACS’07, Annual Meeting, Boston, MA 2007.
Rhyne, T.M. “Visualization and the Larger World of Computer Graphics: What’s Happening Out There?”, in TR NEWS, (a publication of the Transportation Research Board), 252, September-October 2007, pp. 20 – 23. http://research.csc.ncsu.edu/cva/TRN_RHYNE.pdf
Stevenson, D. and R. Dutta and G. N. Rouskas and D. Reeves and I. Baldine “On the Suitability of Composable Services for the Assurable Future Internet” in Proceedings of MILCOM 2007. http://net-silos.net/joomla/index.php?option=com_docman&task=doc_view&gid=109&Itemid=39#320,25,Slide 25
Swan, G.E., C.N. Lessov-Schlaggar, R.E. Krasnow, K.C. Wilhelmsen, P. Jacob, and N.L. Benowitz. (2007). Genetic and environmental sources of variation in heart rate response to infused nicotine in twins. Cancer Epidemiol. Biomarkers Prev. 16, 1057-1064. http://cebp.aacrjournals.org/cgi/content/full/16/6/1057
Tilson, Jeffery R., Gloria Rendon, and Eric Jakobsson “MotifNetwork: A Grid-enabled Workflow for High-throughput Domain-centered Analysis of Biological Sequences”, Pacific Rim Application and Grid Middleware Assembly (PRAGMA13) Workshop. NCSA, Sept, 2007.
Tilson, Jeffrey L. , Alan Blatecky, Gloria Rendon, Mao-Feng Ger, Eric Jakobssonc. “MotifNetwork: Genome-Wide Domain Analysis using Grid-enabled Workflows” Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on 14-17 Oct. 2007 Page(s):872-879.
Tilson, Jeffrey L., Gloria Rendon, Mao-Feng Ger, Eric Jakobsson. “MotifNetwork: A Grid-enabled Workflow for High-throughput Domain Analysis of Biological Sequences: Implications for annotation and study of phylogeny, protein interactions, and intraspecies variation” Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on 14-17 Oct. 2007 Page(s):620-627. – Best Paper award.
Tilson, Jeffrey L. , Alan Blatecky, Gloria Rendon, Mao-Feng Ger, Eric Jakobsson. “MotifNetwork: Genome-Wide Domain Analysis using Grid-enabled Workflows” Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on 14-17 Oct. 2007 Page(s):872-879.
Tilson, Jeffrey L., Gloria Rendon, Mao-Feng Ger, Eric Jakobsson. “MotifNetwork: A Grid-enabled Workflow for High-throughput Domain Analysis of Biological Sequences: Implications for annotation and study of phylogeny, protein interactions, and intraspecies variation” Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on 14-17 Oct. 2007 Page(s):620-627. – Best Paper award.
Vellala, M. and A. Wang and G. N. Rouskas and R. Dutta and I. Baldine and D. Stevenson “A Composition Algorithm for the {SILO} Cross-Layer Optimization Service Architecture” in Proceedings of ANTS 2007. http://rouskas.csc.ncsu.edu/Publications/Conferences/ANTS-Vellala-2007.pdf
Wright, F.A., Huang, H., Guan, X., Gamiel, K., Jeffries, C., Barry, W.T., de Villena, F.P., Sullivan, P.F., Wilhelmsen, K.C., and Zou,F. (2007). Simulating association studies: a data-based resampling method for candidate regions or whole genome scans. Bioinformatics. 23, 2581-2588.
Wright, Fred A., Hanwen Huang, Xiaojun Guan, Kevin Gamiel, Clark Jeffries, William T. Barry, Sullivan Pardo-Manuel, Kirk C. Wilhelmsen, and Fei Zou. 2007. “Simulating Association Studies: a Data-based Resampling Method for Candidate Regions or Whole Genome Scans.” In Bioinformatics, 2007 23: 2581-2588. http://rouskas.csc.ncsu.edu/Publications/Conferences/ANTS-Vellala-2007.pdf
Zhang, Y., R. Fowler, K. Huck, A., Malony, A. Porterfield, D. Reed, S. Shende, V. Taylor, and X. Wu. US QCD computational performance studies with PERI. J. Phys: Conf. Ser, 78(012083):5pp, August 2007. http://prophesy.cs.tamu.edu/publications/scidac07-milc.pdf
Froyd, Nathan, Nathan Tallent, John Mellor-Crummey, and Rob Fowler. Call path profiling for unmodified, optimized binaries. In Proceedings of the GCC and GNU Toolchain Developers’ Summit, Ottawa, Canada, June 2006.
Gamblin, Todd, Rob Fowler, and Daniel A. Reed. Runtime methods for automatic behavioral stratification of scientific codes. In Proceedings of the Los Alamos Computer Science Institute 7th Annual Symposium, Santa Fe, MN, October 2006. Best Poster Award. http://www.cs.unc.edu/~tgamblin/LACSI2006PosterPresentation.pdf
Nurmi, D., A. Mandal, J. Brevik, K, C. Koelbel, R. Wolski and K. Kennedy, “Evaluation of a Workflow Scheduler Using Integrated Performance Modeling and Batch Queue Wait Time Prediction,” in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC), pp. 29-, November 2006. http://vgrads.rice.edu/papers/batch-queue-sc06.pdf
Ramakrishnan, Lavanya, Brian O. Blanton, Howard M. Lander, Richard A. Luettich, Jr, Daniel A. Reed, Steven R. Thorpe, “Real-time Storm Surge Ensemble Modeling in a Grid Environment”, Second International Workshop on Grid Computing Environments (GCE), Workshop at SC|06, November 2006, Tampa, Florida. http://www.renci.org/wp-content/pub/scoop/presentations/SCOOPPaper-GCEFinal.pdf
Ramakrishnan, L., M. S.C Reed, J. L. Tilson, D. A. Reed “Grid Portals for Bioinformatics” Second International Workshop on Grid Computing Environments (GCE), Workshop at SC|06, Tampa, Florida (2006). http://www.renci.org/wp-content/pub/ncbioportal/BioportalPaper-GCEFinal.pdf
Rhyne T-M, A. MacEachren, J. Dykes, “Guest Editors’ Introduction: Exploring Geovisualization,” /IEEE Computer Graphics and Applications/, vol. 26, no. 4, pp. 20-21, Jul/Aug, 2006.
F. Berman, H. Casanova, A. Chien, K.Cooper, H. Dail, A. Dasgupta, W. Deng, J. Dongarra, L. Johnsson, K. Kennedy, C. Koelbel, B. Liu, X. Liu, A. Mandal, G. Marin, M. Mazina, J. Mellor-Crummey, C. Mendes, A. Olugbile, M. Patel, D. Reed, Z. Shi, O. Sievert, H. Xia and A. YarKhan, “New Grid Scheduling and Rescheduling Methods in the GrADS Project,” in International Journal of Parallel Programming (IJPP), Volume 33(2-3):pp. 209-229, 2005.
“Planning for Cyberinfrastructure Software” NSF SCI workshop, February 2005. http://www.si.umich.edu/InfrastructureWorkshop/documents/NSF_2005_CISoftware.pdf
Ruckenstein, E. Shulgin, J. L. Tilson, “Treatment of Dilute Clusters of Methanol and Water by ab Initio Quantum Mechanical Calculations”, E, J. Phys. Chem. A. 109(5); 807-815. (2005)
Tilson, J.L. “Conventional Spin-Orbit Configuration Interaction in the COLUMBUS Suite of Programs”, Programmers workshop, Argonne National Laboratory, August, 2005.
